Peter Freddolino
Assistant Professor
Biological Chemistry, Computational Medicine and Bioinformat
University of Michigan
United States of America
Biography
Education Ph.D. in Biophysics and Computational Biology from the University of Illinois at Urbana-Champaign, 2009 B.S. with Honors in Biology from the California Institute of Technology, 2004 Professional History 2011-2014: Postdoctoral research scientist Tavazoie Lab, Department of Systems Biology, Columbia University 2009-2011: Postdoctoral research scientist Tavazoie Lab, Lewis-Sigler Institute for Integrative Genomics, Princeton University
Research Interest
The regulatory networks of bacteria play a key role in their information processing capabilities, coordinating and executing interactions with their environments. Quantitative, predictive models of these networks would be tremendously beneficial for facilitating the development of new antimicrobial therapies, enabling synthetic biology applications, and understanding bacterial evolution and ecology. Ultimately, the aim of my laboratory is to build a multiscale framework enabling modeling of bacterial regulatory networks at any level of detail, from atomistic to cellular. To this end, we develop and apply high-throughput experimental methods for measuring biomolecular interactions and cellular regulatory states in vivo, and for profiling the phenotypic consequences of regulatory changes. In tandem with these experimental approaches, we use molecular simulation and mathematical modeling to obtain high-resolution insight into the biomolecular interactions driving regulatory networks, and the systems-level effects of altering them.
Publications
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Prediction of structure and function of G protein-coupled receptors N Vaidehi, WB Floriano, R Trabanino, SE Hall… - Proceedings of the National Academy of Sciences, 2002
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Ten-microsecond molecular dynamics simulation of a fast-folding WW domain PL Freddolino, F Liu, M Gruebele, K Schulten - Biophysical journal, 2008
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Molecular dynamics simulations of the complete satellite tobacco mosaic virus PL Freddolino, AS Arkhipov, SB Larson, A McPherson… - Structure, 2006
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Coarse-graining of condensed phase and biomolecular systems* A Liwo, C Czaplewski, S Ołdziej, AV Rojas… - Chapter, 2008
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Accelerating molecular modeling applications with graphics processors JE Stone, JC Phillips, PL Freddolino, DJ Hardy… - Journal of computational chemistry, 2007